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Molecular Evolution (Bioinformatics IV) 

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Molecular Evolution (Bioinformatics IV)
 at 
Coursera 
Overview

Duration

17 hours

Total fee

Free

Mode of learning

Online

Difficulty level

Intermediate

Official Website

Explore Free Course External Link Icon

Credential

Certificate

Molecular Evolution (Bioinformatics IV)
 at 
Coursera 
Highlights

  • Shareable Certificate Earn a Certificate upon completion
  • 100% online Start instantly and learn at your own schedule.
  • Course 4 of 7 in the Bioinformatics Specialization
  • Flexible deadlines Reset deadlines in accordance to your schedule.
  • Beginner Level
  • Approx. 17 hours to complete
  • English Subtitles: Arabic, French, Portuguese (European), Italian, Vietnamese, German, Russian, English, Spanish
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Details Icon

Molecular Evolution (Bioinformatics IV)
 at 
Coursera 
Course details

More about this course
  • In the previous course in the Specialization, we learned how to compare genes, proteins, and genomes. One way we can use these methods is in order to construct a "Tree of Life" showing how a large collection of related organisms have evolved over time.
  • In the first half of the course, we will discuss approaches for evolutionary tree construction that have been the subject of some of the most cited scientific papers of all time, and show how they can resolve quandaries from finding the origin of a deadly virus to locating the birthplace of modern humans.
  • In the second half of the course, we will shift gears and examine the old claim that birds evolved from dinosaurs. How can we prove this? In particular, we will examine a result that claimed that peptides harvested from a T. rex fossil closely matched peptides found in chickens. In particular, we will use methods from computational proteomics to ask how we could assess whether this result is valid or due to some form of contamination.
  • Finally, you will learn how to apply popular bioinformatics software tools to reconstruct an evolutionary tree of ebolaviruses and identify the source of the recent Ebola epidemic that caused global headlines.
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Molecular Evolution (Bioinformatics IV)
 at 
Coursera 
Curriculum

Week 1: Introduction to Evolutionary Tree Construction

(Check Out Our Wacky Course Intro Video!)

The Fastest Outbreak

Transforming Distance Matrices into Evolutionary Trees

Toward an Algorithm for Distance-Based Phylogeny Construction

Additive Phylogeny

Course Details

Week 1 FAQs (Optional)

Week 1 Quiz

Week 2: More Algorithms for Constructing Trees from Distance Matrices

Using Least Squares to Construct Distance-Based Phylogenies

Ultrametric Trees

The Neighbor-Joining Algorithm

Week 2 FAQs (Optional)

Week 2 Quiz

Week 3: Constructing Evolutionary Trees from Characters

Character-Based Tree Reconstruction

The Small Parsimony Algorithm

The Large Parsimony Algorithm

Evolutionary Tree Reconstruction in the Modern Era

Week 3 FAQs (Optional)

Week 3 Quiz

Week 4

Paleontology Meets Computing

Decoding an Ideal Spectrum

From Ideal to Real Spectra

Peptide Sequencing

Note on This Week's Assignments

Week 4 Quiz

Week 5: Resolving the T. rex Peptides Mystery?

Peptide Identification

Spectral Dictionaries

The Ostrich Hemoglobin Riddle

Searching for Post-Translational Modifications

Spectral Alignment Algorithm

Note on This Week's Content

Week 5 Quiz

Week 6: Bioinformatics Application Challenge

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Molecular Evolution (Bioinformatics IV)
 at 
Coursera 

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